Changelog
Source:NEWS.md
phytoclass 2.3.0
This version update removes internal functions that became unused once combined into a single function. The sets of functions include “Conduit”, “Fac_F_RR”, “Minimise_elements” and “Random_neighbor”. ## New features * convergence_figure() was added in simulated_annealing_Prochloro() * Progress bar was added in simulated_annealing_Prochloro() * Cluster() now accepts a row_ids input vector to name each sample * Cluster() exports an assigments item that relates the ID to the cluster * Cluster() checks if data.frame input has a column of strings and removes them prior to clustering
Bug Fixes
- The figure functions would
errorif the number of colors needed exceeded 11. Now, the figure functions can handle additional colors. -
Cluster()had an issue if given a matrix without rownames and would error, now will convert to data.frame prior to running boxcar normalising
phytoclass 2.2.0
- Add automatic switch to Prochlorococcus function based on dvchl column
- added convergence plot